RIKEN GENESIS offers whole genome chips for a range of different animals and Plants.
The Infinium Assay is used.
|Number of markers||Spacing|
|CanineHD BeadChip||The CanineHD Genotyping BeadChip contains more than 170,000 markers placed on the CanFam2.0 reference sequence. Illumina has developed the BeadChip in collaboration with the LUPA Consortium, which includes 22 European universities and other partners such as the Broad Institute.||172,115||14kb|
|BovineHD BeadChip||The BovineHD BeadChip is the most comprehensive genome-wide bovine genotyping array, providing superior power to interrogate genetic variation across any breed of beef and dairy cattle. Illumina has developed this product in collaboration with major bovine agricultural thought leaders, including USDA-ARS, UNCEIA-INRA, Pfizer Animal Genetics and the University of Missouri. Featuring more than 777,000 SNPs that uniformly span the entire bovine genome, the BovineHD BeadChip enables a broad range of applications such as genome-wide selection, identification of quantitative trait loci, evaluation of genetic merit, cross-breed mapping, linkage disequilibrium studies, comparative genetic studies, and breed characterization for evaluating biodiversity.||777,962||3.43kb|
|The BovineSNP50 v2 DNA Analysis BeadChip Kit was developed by Illumina in collaboration with the USDA-ARS, University of Missouri, and the University of Alberta. The BeadChip contains 54,609 informative SNPs uniformly distributed across the entire genome of major cattle breed types. All SNP probes have been validated in 19 common beef and dairy breeds. This empowers applications such as genome-wide enabled selection, identification of quantitative trait loci, evaluation of genetic merit of individuals, and comparative genetic studies.||54,609||49.4kb|
|PorcineSNP60 BeadChip||The PorcineSNP60 DNA Analysis Kit features 62,163 evenly spaced probes offering comprehensive coverage of the porcine genome. The BeadChip was developed through Illumina's iSelect program in collaboration with leading porcine researchers from both US and International Universities and Research Institutes including Iowa State University, the University of Illinois, Cambridge University, and Wageningen University. The BeadChip offers more than sufficient SNP density for genome-wide association studies and other applications such as genome-wide selection, determination of genetic merit, identification of quantitative trait loci, and comparative genetic studies.||62,163||43.4kb|
|OvineSNP50 BeadChip||The OvineSNP50 BeadChip was developed in collaboration with leading ovine researchers from AgResearch, Baylor UCSC, CSIRO, and the USDA as part of the International Sheep Genomics Consortium. The OvineSNP50 BeadChip provides uniform genome-wide coverage with an estimated one marker per 46kb on average. This BeadChip offers more than sufficient SNP density for genome-wide association studies and other applications such as genome-wide selection, determination of genetic merit, identification of quantitative trait loci, and comparative genetic studies.||54,241||50.86kb|
|MaizeSNP50 BeadChip||The Maize SNP50 Genotyping BeadChip offers a cost-effective and high-quality genotyping solution for researchers conducting genome-wide association studies in maize. The BeadChip contains 56,110 validated single nucleotide polymorphism (SNP) probes derived from the B73 reference sequence. Illumina developed the BeadChip in collaboration with TraitGenetics, The French Institute for Agricultural Research (INRA), and Syngenta, with the SNP content selected from several public and private sources.||56,110||40kb|